Preview

Trudy VNIRO

Advanced search

CRISPR/Cas9-knockout of the myostatin gene in common carp

https://doi.org/10.36038/2307-3497-2025-202-95-102

EDN: OWAVDW

Abstract

The goal of the study is to develop a method for knocking out the common carp two paralogous copies of the myostatin gene using the CRISPR/Cas9 system with delivery of the editing complex into zygote by microinjection.

Materials and Methods: fertilization of common carp eggs was carried out in vitro, sgRNA was synthesized by PCR with overlapping oligonucleotides and subsequent transcription, the editing complex consisting of sgRNA and the Cas9 endonuclease was delivered to the carp zygote by microinjection before the first cleavage. The region contained the editing site was amplified by nested PCR, editing events were detected by Sanger sequencing and confirmed by NGS.

Novelty: For the first time in Russia, a knockout system for the common carp myostatin gene has been developed, allowing both paralogous copies of the gene to be modified simultaneously.

Result: 12 F0 common carp individuals with knockout of the myostatin gene were obtained.

Practical significance: A methodological approach has been tested that allows for the rapid and controlled production of common carp with programmed mutations. Myostatin gene-deficient fish exhibit increased muscle growth due to hypertrophy and hyperplasia of muscle fibers, resulting in improved fish fillet quality. Fast-growing fish populations are more suitable for aquaculture than populations with standard growth rates.

About the Authors

Maria N. Ruzina
Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»); N. I. Vavilov Institute of General Genetics RAS («IGG RAS»)
Russian Federation

19, Okruzhnoy proezd, Moscow, 105187

3, Gubkina str., Moscow, 119333



Olga  R. Emelianova
Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»); N. I. Vavilov Institute of General Genetics RAS («IGG RAS»)
Russian Federation

19, Okruzhnoy proezd, Moscow, 105187

3, Gubkina str., Moscow, 119333



Svetlana Yu.  Saveleva
Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»); N. I. Vavilov Institute of General Genetics RAS («IGG RAS»)
Russian Federation

19, Okruzhnoy proezd, Moscow, 105187

3, Gubkina str., Moscow, 119333



Sergey A. Bruskin
N. I. Vavilov Institute of General Genetics RAS («IGG RAS»); Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»)
Russian Federation

3, Gubkina str., Moscow, 119333

19, Okruzhnoy proezd, Moscow, 105187



Nikolai  S. Mugue
Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»); N. . K. Koltzov Institute of Developmental Biology RAS («IDB RAS»)
Russian Federation

19, Okruzhnoy proezd, Moscow, 105187

26, Vavilov Str., Moscow, 119334



References

1. Chen H., Wang J., Du J., Mandal B. K., Si Zh., Xu X., Yang H., Wang Ch. 2021. Analysis of recently duplicated TYRP1 genes and their effect on the formation of black patches in Oujiangcolor common carp (Cyprinus carpio var. color) // Anim. Genet. V. 52. P. 451-460. DOI: 10.1111/age.13071

2. Chen H., Wang J., Du J., Si Z., Yang H., Xu X., Wang C. 2019. ASIP disruption via CRISPR/Cas9 system induces black patches dispersion in Oujiang color common carp // Aquaculture. V. 498. P. 230-235. DOI: 10.1016/j.aquaculture.2018.08.057

3. Chen L., Li C., Li B., Zhou X., Bai Y., Zou X., Zhou Z.. et al. 2024. Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success // Fundamental Research. V. 4. P. 589-602. DOI: 10.1016/j.fmre.2023.06.011

4. Concordet J.-P., Haeussler M. 2018. CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens // Nucleic. Acids. Res. V. 46. P. W242-W245. DOI: 10.1093/nar/gky354

5. Doudna J. A., Charpentier E. 2014. The new frontier of genome engineering with CRISPR-Cas9 // Science V. 346(6213). P. 12580-96. DOI: 10.1126/science.1258096

6. Guo C., Ma X., Gao F., Guo Y. 2023. Off-target effects in CRISPR/ Cas9 gene editing // Front. Bioeng. Biotechnol. V. 11. P. 1143-157. DOI: 10.3389/fbioe.2023.1143157

7. Ivanova N. V., Deward J. R., Hebert P. D.N. 2006. An inexpensive, automation-friendly protocol for recovering high-quality DNA // Molecular Ecology Notes. V. 6(4). P. 998-1002. DOI: 10.1111/j.1471-8286.2006.01428.x

8. Kearse M., Moir R., Wilson A., Stones-H avas S., Cheung M., Sturrock S., Buxton S., Cooper A., Markowitz S. et al. 2012. Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data // Bioinformatics V. 28(12). P. 1647-2164. DOI: 10.1093/bioinformatics/bts199

9. Labun K., Montague T. G., Krause M., Torres Cleuren Y. N., Tjeldnes H., Valen E. 2019. CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing // Nucleic. Acids.Res. V. 47. P. W171-W174. DOI: 10.1093/nar/gkz365

10. Mandal B. K., Chen H., Si Z., Hou X., Yang H., Xu X., Wang J., Wang C. 2020. Shrunk and scattered black spots turn out due to mc1r knockout in a white- black Oujiang color common carp (Cyprinus carpio var. color) // Aquaculture. V. 518. P. 734-822. DOI: 10.1016/j.aquaculture.2019.734822

11. Orlova S.Yu., Ruzina M. N., Emelianova O. R., Sergeev A. A., Chikurova E. A., Orlov A. M., Mugue, N.S. 2024. In search of a target gene for a desirable phenotype in aquaculture: genome editing of Cyprinidae and Salmonidae species // Genes (Basel). V. 15. P. 726. DOI: 10.3390/genes15060726

12. Shahi N., Mallik S. K., Sarma D. 2022. Muscle growth in targeted knockout common carp (Cyprinus carpio) mstn gene with low off-target effects // Aquaculture. V. 547. 737423. DOI: 10.1016/j.aquaculture.2021.737423

13. Xu P. Zhang X., Wang X., Li J., Liu G., Kuang Y., Xu J., Zheng X., Ren L., Wang G., et al. 2014. Genome sequence and genetic diversity of the common carp, Cyprinus carpio // Nat Genet. V. 46. P. 1212-1219. DOI: 10.1038/ng.3098

14. Zhai G., Shu T., Chen K., Lou Q., Jia J., Huang J., Shi C., Jin X., He J., Jiang D. et al. 2022. Successful production of an all-female common carp (Cyprinus carpio L.) population using cyp17a1-deficient neomale carp // Engineering. V. 8. P. 181-189. DOI: 10.1016/j.eng.2021.03.026

15. Zhong Z., Niu P., Wang M., Huang G., Xu S., Sun Y., Xu X., Hou Y., Sun X., Yan Y. et al. 2016. Targeted disruption of sp7 and myostatin with CRISPR-Cas9 results in severe bone defects and more muscular cells in common carp // Sci. Rep. V. 6. P. 229-253. DOI: 10.1038/srep22953


Review

For citations:


Ruzina M.N., Emelianova O.R., Saveleva S.Yu., Bruskin S.A., Mugue N.S. CRISPR/Cas9-knockout of the myostatin gene in common carp. Trudy VNIRO. 2025;202(4):95-102. (In Russ.) https://doi.org/10.36038/2307-3497-2025-202-95-102. EDN: OWAVDW



Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 2307-3497 (Print)

По вопросу подписки и приобретения номеров журналов просьба обращаться в ООО «Агентство «КНИГА-СЕРВИС» (т.:  495 – 680-90-88;  E-mail: public@akc.ru  Web: www.akc.ru).